Dear Peter,
up to our galaxy admin, we make use of the Data Manager, so this seems not to be the issue here?: [cid:[email protected]] Mit freundlichen Grüßen Matthias Enders ----------------------------------------------------------------------- GERMAN SEED ALLIANCE GmbH c/o Norddeutsche Pflanzenzucht Hans-Georg Lembke KG Hohenlieth, 24363 Holtsee Tel.: +49 (0)4351/ 736-189 Fax: + 49 (0)4351/ 736-271 Mobil: +49 (0)151/ 14247360 Email: [email protected] Firmensitz Köln Amtsgericht Köln, HRB 73844 -----Ursprüngliche Nachricht----- Von: Peter Cock <[email protected]> Gesendet: Dienstag, 10. Juli 2018 13:27 An: Matthias Enders <[email protected]> Cc: Björn Grüning <[email protected]>; [email protected] Betreff: Re: [galaxy-dev] Expose Command Line in Galaxy Priorität: Hoch Thanks for getting back to us - this was actually my guess from the original email - that it was not a blastn error message, but a Galaxy message before ever calling BLAST. My guess is you are seeing this issue, or something like it, with having to restart Galaxy to reload the *.loc files? https://github.com/galaxyproject/galaxy/issues/3171 Peter On Tue, Jul 10, 2018 at 12:22 PM, Matthias Enders <[email protected]<mailto:[email protected]>> wrote: > Dear all, > > finally a restart of the container solved the issue with the database/blast. > > Regarding the problem with the command line: > For other tools, the command line showed up, but not for blastn, as the > wrapper encountered the error before creating the command line (this is my > interpretation). > > So the error: "An invalid option was selected for database, > 'myCoolDatabaseName', please verify." Was produced by the wrapper, which did > not find the new database before restarting the galaxy container. > > So the real issue here is perhaps more on "How could blast+ be made aware of > new integrated databases, without restarting"? > > Mit freundlichen Grüßen > > Matthias Enders
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