All the links to the sources are at the bottom of the page and seem to work, except of GPASS which is here: http://stat.psu.edu/~yuzhang/software/GPASS.tar
I would double check with your users whether they actually need these tools, since they are fairly old. Martin On Mon, Jul 16, 2018 at 12:56 PM Tom Misilo <[email protected]> wrote: > Hi Martin, > > > > I will try and figure out where I came across the page (it may have been > from Google). > > > > I am having trouble installing: BEAM, LPS, PASS, and GPASS. Conda cannot > find any sources to install these packages. > > > > Thank you! > > Tom > > > > *From:* Martin Čech <[email protected]> > *Sent:* Monday, July 16, 2018 12:42 PM > *To:* Tom Misilo <[email protected]> > *Cc:* [email protected] > *Subject:* Re: [galaxy-dev] Installing Tool Dependencies > > > > Hello Tom, > > > > that page is very very outdated and I wouldn't trust it. Do you have any > specific tools from that list that are giving you trouble? If not then I > would ignore it completely. > > > > Majority of the tools are now installed through the Toolshed and > dependencies are auto-managed by Galaxy's own Conda which should provide a > much better experience. > > > > Martin > > > > p.s. from what page did you get to this list? > > > > On Mon, Jul 16, 2018 at 12:06 PM Tom Misilo <[email protected]> wrote: > > Hello, > > > > I am trying to help a research here at Florida Tech setup Galaxy locally > to process their data. However, I am running into a problem installing some > tool dependencies was on this page ( > https://moin.galaxyproject.org/Admin/Tools/ToolDependencies). > > > > For example, I am trying to install BEAM, LPS, PASS, and GPASS. However, I > cannot find in the documentation for either the tools themselves or on > Galaxy on how to set these tools up for use in Galaxy. Would you be able to > assist in this matter? > > > > Thank you! > > <https://maps.google.com/?q=150+W.+University+Blvd+%0D%0A+Melbourne,+FL+32901&entry=gmail&source=g> > > Tom > > > > Thomas Misilo > > Network Engineer > > Florida Institute of Technology > > Evans Library > > 150 W. University Blvd > <https://maps.google.com/?q=150+W.+University+Blvd+%0D%0A+Melbourne,+FL+32901&entry=gmail&source=g> > > Melbourne, FL 32901 > <https://maps.google.com/?q=150+W.+University+Blvd+%0D%0A+Melbourne,+FL+32901&entry=gmail&source=g> > > Phone: 321-674-8831 <(321)%20674-8831> > > Fax: 321-724-2559 <(321)%20724-2559> > > [email protected] > > > > ___________________________________________________________ > Please keep all replies on the list by using "reply all" > in your mail client. To manage your subscriptions to this > and other Galaxy lists, please use the interface at: > https://lists.galaxyproject.org/ > > To search Galaxy mailing lists use the unified search at: > http://galaxyproject.org/search/ > >
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