Hi Sonali,
Roman sent you the info for the API (thanks!) and here is some
information about the command line usage.
Basically, any of the tools can be run from the command line.
Example:
python <tool> <input file> < output file>
All of the tool dependencies would need to be in place:
https://bitbucket.org/galaxy/galaxy-central/wiki/ToolDependencies
Sort of related to this question, but also to a prior question:
https://bitbucket.org/galaxy/galaxy-central/wiki/ToolConfigSyntax
I don't know if you have this already, but this is a google search link
for the Galaxy wiki at bitbucket. Add in your own search terms to locate
documents - these will cover in detail most of these sort of topics.
http://www.google.com/search?q=site%3Ahttp%3A%2F%2Fbitbucket.org%2Fgalaxy%2Fgalaxy-central%2Fwiki
You can also search prior mailing list posts, using google or Nabble at
GMOD (GMOD only has most recent posts).
http://www.google.com/search?q=site%3Ahttp%3A%2F%2Flists.bx.psu.edu%2Fpipermail
http://gmod.org/wiki/Galaxy#Mailing_Lists
Best,
Jen
Galaxy team
On 1/14/11 1:50 AM, Sonali Amonkar wrote:
Hi,
1.Does Galaxy provide command line execution of Workflows / tools?
2.Does Galaxy provide API of its own, which can be imported as a library
in another program and used for executing certain workflows?
Thanks for your time.
Regards,
Sonali Amonkar
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