This is a knwon issue of GTF file from Ensembl

--- On Mon, 1/24/11, Matteo Bovolenta <bvl...@unife.it> wrote:


From: Matteo Bovolenta <bvl...@unife.it>
Subject: [galaxy-user] Gene Name in Cufflink/compare/diff
To: galaxy-u...@bx.psu.edu
Date: Monday, January 24, 2011, 5:05 AM


Hi all,

when I run a RNASeq analysis using tophat, cufflink, coffcompare and
cuffdiff by aligning my data to the RefSeq genes I obtain tables from
cufflink/compare/diff which does not include the gene name, but only
the NM_.
Does someone knows how I can obtain all the tables with the gene name?

Thank you all very much for the support,

Best Regards,

Matteo

-- 
Matteo Bovolenta, PhD
Dipartimento di Medicina Sperimentale e Diagnostica
Sezione di Genetica Medica
Università di Ferrara
Via Fossato di Mortara, 74
44100 Ferrara
tel +39 0532 974449(office)
tel +39 0532 974502 (lab)
fax +39 0532 236157
email bvl...@unife.it
http://www.unife.it/medicina/geneticamedica
http://www.bio-nmd.eu
registered in ORPHANET
http://www.orpha.net

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