Two questions -
1. When I call peaks with MACS on Galaxy I get different results than
if I run MACS on my machine via command line. I'm using default
parameters in both instances.
2. Are there any tools in galaxy for doing de-novo motif analysis of
the peaks that I have called. If not can anyone suggest their favorite
programs for doing so? I prefer a web interface but can fumble my way
around using command line.
Thanks,
Chris


Christopher Futtner
Duke University, Onaitis Lab
919-684-1183
106 Research Dr.
MSRB II, rm. 2045 Bay 11
Durham, NC. 27710
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