Two questions - 1. When I call peaks with MACS on Galaxy I get different results than if I run MACS on my machine via command line. I'm using default parameters in both instances. 2. Are there any tools in galaxy for doing de-novo motif analysis of the peaks that I have called. If not can anyone suggest their favorite programs for doing so? I prefer a web interface but can fumble my way around using command line. Thanks, Chris
-- Christopher Futtner Onaitis Lab / Duke University 919-684-1183 106 Research Dr. MSRB II rm 2045 Durham, NC. 27710 _______________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
