Hi Karl, As you see from the error message, you seem to be getting this error because the machine is running out of memory. This can in part be caused by a configuration option that might be set in Galaxy's universe_wsgi.ini file (see below). Did you have any jobs running while trying to download the file? Waiting until those finish might free up some memory.
A thing to try is to connect to the instance, edit Galaxy's universe_wsgi.ini file to se debug = False, restart Galaxy and try again. Are you familiar with that at all? The basic steps are as follows: [local]$ ssh -i <path to your AWS private key file> ubuntu@<instance public IP> [ec2]$ sudo su galaxy [ec2]$ cd /mnt/galaxyTools/galaxy-central [ec2]$ vi universe_wsgi.ini -- edit file (around line 226) to set: debug = False [ec2]$ sh run.sh --stop-daemon [ec2]$ sh run.sh --daemon Yet another option is to connect the instance in the same way, look through the data library on the file system and manually copy the file out of the instance. You can use the following command to copy the file to your local instance: [local]$ scp -i <path to your AWS private key file> ubuntu@<instance public IP>:/mnt/galaxyData/files/000/dataset_<ID>.dat . Let us know if none of this works, Enis On Mon, Mar 28, 2011 at 12:02 PM, <karlerh...@berkeley.edu> wrote: > > Hello, > > I'm trying to download the library files I processed on my galaxy cloud > instance, but I'm getting an error. At the top (on the right panel) it > says "Server Error" and then lists the URL where the data should be and > then lists: > > Module paste.exceptions.errormiddleware:143 in __call__ > << try: > __traceback_supplement__ = Supplement, self, environ > app_iter = self.application(environ, start_response) > return self.make_catching_iter(app_iter, environ) > except:>> app_iter = self.application(environ, start_response) > Module paste.debug.prints:98 in __call__ > << try: > status, headers, body = wsgilib.intercept_output( > environ, self.app) > if status is None: > # Some error occurred>> environ, self.app) > Module paste.wsgilib:544 in intercept_output > << try: > for item in app_iter: > output.write(item) > finally: > if hasattr(app_iter, 'close'):>> output.write(item) > MemoryError: out of memory > > > > Is there some easy fix to this? I'd really like to get that data off of > the cloud instance and be able to terminate it. > > thanks, > > karl > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ >
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
