Karl,
Zea mays is now available as a general database/build label. The full
value is "Zea_mays_B73_RefGen_v2", but searching for any part of that
or "maize" will bring it up.
Thanks for using Galaxy.
Regards,
Kelly
On Mar 6, 2011, at 12:09 PM, karlerh...@berkeley.edu wrote:
Oh, I didn't see your email before I sent that last one. That makes
sense, thanks for the confirmation!
Karl,
Zea mays is available for use under the NGS tools. I did notice that
it is not available as one of Galaxy's genome/database labels (such
as
on upload), but this is an oversight that will be corrected ASAP. You
can still use the mapping tools in the meantime.
Regards,
Kelly
On Mar 5, 2011, at 3:49 PM, karlerh...@berkeley.edu wrote:
Hello,
I'm interested in using the galaxy tools to analyze some
transcriptome
libraries I made of maize seedlings. Would it be possible to upload
the
maize reference genome to the galaxy browser?
It's available at the following website:
http://ftp.maizesequence.org/current/
Hope this can be done, would be really exciting!
Thanks,
Karl
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
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