Karl,

Zea mays is now available as a general database/build label. The full value is "Zea_mays_B73_RefGen_v2", but searching for any part of that or "maize" will bring it up.


Thanks for using Galaxy.

Regards,
Kelly


On Mar 6, 2011, at 12:09 PM, karlerh...@berkeley.edu wrote:


Oh, I didn't see your email before I sent that last one.  That makes
sense, thanks for the confirmation!



Karl,

Zea mays is available for use under the NGS tools. I did notice that
it is not available as one of Galaxy's genome/database labels (such as
on upload), but this is an oversight that will be corrected ASAP. You
can still use the mapping tools in the meantime.

Regards,
Kelly


On Mar 5, 2011, at 3:49 PM, karlerh...@berkeley.edu wrote:


Hello,

I'm interested in using the galaxy tools to analyze some transcriptome
libraries I made of maize seedlings.  Would it be possible to upload
the
maize reference genome to the galaxy browser?

It's available at the following website:

http://ftp.maizesequence.org/current/

Hope this can be done, would be really exciting!

Thanks,

Karl

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