Yury Bukhman wrote: > Hi, > > we have set up a Galaxy server for internal use. We would like to provide > indexes for NGS mapping tools for a set of organisms that are relevant to our > research. While bowtie has a repository of such indexes, other tools, e.g. > bwa, don't seem to have one, so we have to build our own. Is there a > repository of pre-built indexes for all mapping tools supported by Galaxy > somewhere?
Hi Yury, We are working on setting up a mirror of all of our reference data that will be accessible via rsync and possibly http. There'll be an announcement when this is available. --nate > > Thanks. > > Yury > > > -- > Yury V. Bukhman, Ph.D. > Associate Scientist, Bioinformatics > Great Lakes Bioenergy Research Center > University of Wisconsin - Madison > 445 Henry Mall, Rm. 513 > Madison, WI 53706, USA > Phone: 608-890-2680 Fax: 608-890-2427 > Email: [email protected] > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ > ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
