On Thu, Apr 14, 2011 at 4:15 PM, Guru Ananda <g...@psu.edu> wrote: > Hi Peter, > There isn't a built-in Galaxy tool to compute GC%, yet.
Thanks Guru. > You could perhaps use UCSC's hgGcPercent binary, which lets you > compute GC% for BED intervals. You can find the same here: > http://genome.ucsc.edu/FAQ/FAQdownloads#download27 I'll be working with simple sequence files (FASTA, or even FASTQ, SFF, etc) rather than BED files, but I'll keep that in mind. Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/