Thanks for pointing this out, Brad. Both geecee and infoseq are in fact available on Galaxy under EMBOSS section.
Guru. On Thu, Apr 14, 2011 at 12:13 PM, Brad Chapman <chapm...@50mail.com> wrote: > Peter and Guru; > > [Computing GC] > > > I'll be working with simple sequence files (FASTA, or even FASTQ, > > SFF, etc) rather than BED files, but I'll keep that in mind. > > Emboss has some utilities that do this. infoseq and geecee, and > there are also programs for exploring CpG islands: > > > http://emboss.sourceforge.net/apps/release/6.3/emboss/apps/nucleic_cpg_islands_group.html > > Brad > -- Graduate student, Bioinformatics and Genomics Makova lab/Galaxy team 505 Wartik lab University Park PA 16802 g...@psu.edu
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