Thanks for pointing this out, Brad. Both geecee and infoseq are in fact
available on Galaxy under EMBOSS section.


On Thu, Apr 14, 2011 at 12:13 PM, Brad Chapman <> wrote:

> Peter and Guru;
> [Computing GC]
> > I'll be working with simple sequence files (FASTA, or even FASTQ,
> > SFF, etc) rather than BED files, but I'll keep that in mind.
> Emboss has some utilities that do this. infoseq and geecee, and
> there are also programs for exploring CpG islands:
> Brad

Graduate student, Bioinformatics and Genomics
Makova lab/Galaxy team
505 Wartik lab
University Park PA 16802
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