I'm trying to use the concatenate fasta tool at
http://main.g2.bx.psu.edu/root?tool_id=fasta_concatenate0 to
concatenate an xmfa file output from mauve (headers formatted to
following standard: >1:517-24215(+)|0402981.fa
but am receiving the following error.

Traceback (most recent call last):
line 40, in
    if __name__ == "__main__" : __main__()
line 23, in __main__
    species[component.species] = tempfile.TemporaryFile()
  File "/usr/lib/python2.6/tempfile.py", line 475, in TemporaryFile
    (fd, name) = _mkstemp_inner(dir, prefix, suffix, flags)
  File "/usr/lib/python2.6/tempfile.py", line 228, in _mkstemp_inner
    fd = _os.open(file, flags, 0600)
OSError: [Errno 24] Too many open files: '/space/g2main/tmpotY_hX'

Does anyone have any ideas what the issue may be?


Laboratory for Bacterial Evolution and Pathogenesis
Centre for Infectious Diseases and The Roslin Institute
University of Edinburgh Easter Bush Campus
EH25 9RG

Tel: +44 (0)131 6519231
email: p.mca...@sms.ed.ac.uk
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