Kevin: Is this a diploid or haploid organism?
anton galaxy team Anton Nekrutenko http://nekrut.bx.psu.edu http://usegalaxy.org On Jul 12, 2011, at 11:38 PM, Kevin Pawlik PhD wrote: > After viewing tutorials and reading the information associated with various > tools, I ask that you point me toward an appropriate workflow for the > following: > > I sequenced (Illumina) 5 genomes of phenotype(+) samples and 1 genome of a > phenotype(-) control. I uploaded fastqsanger files to Galaxy and performed > Bowtie alignments. I want to find the allelic positions where the (+) genomes > differ from the (-) genome. > > Many thanks, > > Kevin > > > > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
