Hello Clare,
This enhancement request is still in on our to-do list for the
public/distribution Galaxy instances. Following the open bitbucket
ticket is the best way to follow status.
Conditional workflow processes/tools have been discussed in several
threads on the galaxy-...@bx.psu.edu mailing list, if you are interested:
Start with a search on "conditional" using Nabble to view the threads.
http://wiki.g2.bx.psu.edu/Mailing%20Lists
Best!
Jen
Galaxy team
On 7/24/11 7:27 PM, Clare Sloggett wrote:
Thanks for putting that in. I was wondering the same thing. The
immediate use of it for me would be to have quality-checking steps at
the beginning of the workflow, and to not proceed if the data does not
pass.
If there is any implementation of conditionals in Galaxy I would be
interested!
Thanks,
Clare
On Sun, May 22, 2011 at 2:00 PM, Florent Angly <florent.an...@gmail.com
<mailto:florent.an...@gmail.com>> wrote:
__
I filed an enhancement report since if the workflow conditional
facility does not appear to exist in Galaxy:
https://bitbucket.org/galaxy/galaxy-central/issue/547/conditional-workflow-steps
Best,
Florent
-------- Original Message --------
Subject: Workflows with conditional statements
Date: Wed, 18 May 2011 10:31:21 +1000
From: Florent Angly <florent.an...@gmail.com>
<mailto:florent.an...@gmail.com>
To: galaxy-user@lists.bx.psu.edu
<mailto:galaxy-user@lists.bx.psu.edu> <galaxy-user@lists.bx.psu.edu>
<mailto:galaxy-user@lists.bx.psu.edu>
Hi all,
I was wondering if there is a way to put conditional statements in a
Galaxy workflow.
This would be useful, for example, in the case of a workflow that has an
optional advanced option that the user can click. This advanced option
would add some extra steps to the data processing.
Another example of how this could be useful is if inside a workflow, the
data needs to be processed differently based on the results of previous
workflow steps. Say, you have a worflow that takes some sequences, and
calculate their average length. Using a conditional statement, the
workflow would put the data through DeBruijn assembler if the reads are
small, but through a traditional Overlap-Layout-Consensus assembler if
the reads are long.
Are conditional statements possible in Galaxy workflows and I just don't
know how to use them?
Best,
Florent
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
--
Jennifer Jackson
http://usegalaxy.org/
http://galaxyproject.org/
___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
