Hi jen, have 4 biological samples, the RNA-seq data for each sample
have 8 to 9 fasq.gz files with each file about 350 MB.
So this is within the limit by public galaxy.
From: Jennifer Jackson [mailto:j...@bx.psu.edu]
Sent: Tuesday, August 09, 2011 4:03 PM
To: Peng, Tao
Subject: Re: [galaxy-user] loading fasq.gz files using FTP
It seems there has been a misunderstanding. Originally in other
communications, your data was explained to be "4 samples with 2.4 GB of
seq data per sample". If your 4 samples are actually a set of files with
a total size of 350GB each (350GB x 4), then combined this would exceed
the maximum quota of 50G per file/200G per history at the public Galaxy
instance at http://usegalaxy.org.
The option for this much data is to run either a local or cloud install.
Help can be found at:
Questions related to local or cloud installations can be sent to the
galaxy-...@bx.psu.edu mailing list. Other users on this list may also
have advice to offer about working with very large datasets.
Best wishes for your project,
On 8/9/11 2:42 PM, Peng, Tao wrote:
> Hi I am NEW to RNA-seq data and galaxy programs. When I try to up-load
> the RNA-seq data using FileZilla using my desktop PC, each file
> (about350 MB) takes about 1 hour to up-load.
> Realizing I have 4 samples, each sample has 9 fasq.gz files, each file
> is about 350 GB, I really need some advice how to make this up-load
> The Galaxy User list should be used for the discussion of
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The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: