For 1) you may refer to  Simulated Dataset of Solexa -
SEQanswers<http://seqanswers.com/forums/showthread.php?t=806>


Has anyone replied you for 2) ?



On 18 September 2011 21:12, Daniel Sher <ds...@sci.haifa.ac.il> wrote:

>  Hello,
>
> I have two questions - I apologize if they are trivial..
>
> 1) I want to simulate the amount of Illumina sequencing needed to sequence
> and assemble a known genome.  Is there a way to randomly pick sequences of a
> specific length from a genome (either one available online or one I
> upload)?  Something like "pick 100bp randomly (either strand), move
> 400-500bp forward and pick another 100bp?"
>
> 2) Is there a way to remove redundant sequences from a FASTA file without
> losing the original sequence names (as happens with "collapse")?
>
> Thanks
>
> Daniel
>
>
>  --
> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
> Daniel Sher, PhD
> Department of Marine Biology
> Leon H. Charney School of Marine Sciences
> University of Haifa, Mt. Carmel 31905, Haifa, Israel
>
> Office +972-4-8240731
> Lab    +972-4-8288961
> email: ds...@sci.haifa.ac.il
>
>
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