I am currently working with one of Illumina's older Bam files and trying to run 
SamTools Pileup.  Unfortunately, the server has repeatedly timed out on me and 
I am unable to run the program on my file.  I was wondering if other people are 
having trouble running Samtools on human genome .bam files or whether this is 
secondary to the way the file is configured (i.e. it was first run through 
Illumina's proprietary software and provided as a .bam without an accompanying 
fastq file)?

Thanks for your help!

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