Hello,
The CuffDiff tool at the main/test public instances and in the last dist
should all support multiple groups. If you want detailed help for the
Cuff* tools, then the tool author's support list might be able to help:
[email protected].
Best wishes for your project,
Jen
Galaxy team
On 10/1/11 5:57 AM, An, Hongyan wrote:
I have 3 groups of accepted hits, each group has 3 replicates. When I add 3
groups with corresponding replicates, the cuffdiff output only gave 2 groups
comparison of differential expression, Please help me here
------
Hongyan An, Ph.D.
Research Associate
Genomics Core of Yale Stem Cell Center
Yale University School of Medicine
10 Amistad Street Room 203
New Haven, CT 06520
phone: (203)-737-6203
Fax: (203) 785-4305
[email protected]<mailto:[email protected]>
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Jennifer Jackson
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___________________________________________________________
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