I was trying to run tophat v1.3.2 on SOLID data and I have this error: 
zohra@bart:~/Bureau/cancer$ tophat  -o /tmp/tophat_SRR036752/  -g 1 -p 4 -C 
/home/zohra/indexes_bowtie/humain_ SRR036752.fastq 

[Tue Oct 11 13:23:53 2011] Beginning TopHat run (v1.3.2)
[Tue Oct 11 13:23:53 2011] Preparing output location /tmp/tophat_SRR036752//
[Tue Oct 11 13:23:53 2011] Checking for Bowtie index files
[Tue Oct 11 13:23:53 2011] Checking for reference FASTA file
[Tue Oct 11 13:23:53 2011] Checking for Bowtie
    Bowtie version:   
[Tue Oct 11 13:23:53 2011] Checking for Samtools
    Samtools Version: 0.1.18
[Tue Oct 11 13:23:53 2011] Generating SAM header for 
[Tue Oct 11 13:23:55 2011] Preparing reads
    format:         fastq
    quality scale:     phred33 (default)
Error running 'prep_reads'
Error: qual length (51) differs from seq length (51) for fastq record !

Can you help me.
Zohra Saci

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