I use cufflinks to assemble my RNA-Seq reads which produced a GTF file, such as 
follows:(1)chr1 Cufflinks       transcript      6234876 6235400 1000    +chr1   
Cufflinks       exon    6234876 6235060 1000    +chr1   Cufflinks       exon    
6235239 6235400 1000    + (2)chr1       Cufflinks       transcript      6230065 
6230437 1000chr1        Cufflinks       exon    6230065 6230437 1000 I want to 
extract transcrip sequence from the (1) and (2). But fetch sequence could only 
extractgenomic sequence, it only fit for transcrit which had one exon,so are 
there any other tools to extract transcripts which had >=2 exons sequence and 
combine it? Thanks a lot!weimin zhao
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:


To manage your subscriptions to this and other Galaxy lists,
please use the interface at:


Reply via email to