Hello Soetkin,

The FASTX-toolkit added into Galaxy has a tool for this. Look under "NGS: QC and manipulation -> FASTX-Toolkit for FASTQ data -> Clip adapter sequences".


If this tool does not do exactly what you want, use the "Options -> Tool search" (top of left tool panel) and enter "trim" to see the alternatives.

Hopefully one of these options will work out for you,

Best,

Jen
Galaxy team

On 11/8/11 8:15 AM, Soetkin Versteyhe wrote:
Hi!

Does anyone know if it is possible to trim sequencing adaptor sequences
away in Galaxy?

Thanks!

*Soetkin Versteyhe, PhD**
*PostDoc**

*
University of Copenhagen
*Faculty of Health Sciences

*The Novo Nordisk Foundation*
*Center for Basic Metabolic Research*

Integrative Physiology

Blegdamsvej 3B *
*2200 KĂžbenhavn N

Denmark*
**
*PHONE +45 35337116*

*_soetkin.verste...@sund.ku.dk__
_http://sund.ku.dk
http://metabol.ku.dk <http://metabol.ku.dk/>*
**

*



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