I think closest to what you want to do in galaxy can be done in cistrome http://wiki.g2.bx.psu.edu/Community/Cistrome
Unless I am missing some galaxy tool in testing, which other galaxy users more closely following galaxy test can comment on best Abhay 2011/11/16 Mónica Pérez Alegre <monica.pe...@cabimer.es> > ** > > Hi all**** > > ** ** > > We are working with chip-chip data of S. *cerevisiae* (from Affymetrix) > and actually we have two problems and we don´t know if it´s possible to > perform in Galaxy:**** > > ** ** > > 1. We use the tool intersect to get the annotation of positive genomic > regions in our file bed. After, we need calculate statistical enrichments > for associations between genomics regions and annotations. It´s this > possible in Galaxy?**** > 2. Other query. How plot for visual inspection enrichment ratio > profile versus different sets of genomic loci (i.e.: tRNA, LTR,…)**** > > ** ** > > Best Regards,**** > > ** ** > > *☺**If you have used the Services of the Genomics Unit** **of Cabimer, we > would be grateful if you would give us a mention in future publications*** > > ***Mónica Pérez Alegre****, PhD*** > > *Genomics Unit***** > > *CABIMER-CSIC*** > > *Edif. CABIMER - Avda. Américo Vespucio s/n*** > > *Parque Científico y Tecnológico Cartuja 93*** > > *41092 Seville-SPAIN***** > > *Tlf: +34 954 467 828*** > > *Fax: +34 954 461 664*** > > *www.cabimer.es***** > > *http://www.cabimer.es/web/es/unidades-apoyo/genomica*<http://www.cabimer.es/web/es/unidades-apoyo/genomica> > **** > > ** ** > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ >
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
