Thanks. I'll be sure to keep you guys updated. So far everything is
On Tue, Jan 24, 2012 at 9:20 AM, Enis Afgan <eaf...@emory.edu> wrote:
> Hi again Greg,
> On Tue, Jan 24, 2012 at 2:51 PM, mailing list <margeem...@gmail.com> wrote:
>> Hi guys,
>> So I'm trying to take a bioinformatics pipeline we currently run on
>> our own SGE cluster (which seems to have a lot of customizations ! I'm
>> finding out) and I want to run it on Amazon using CloudMan.
> Glad to hear this! Please let me know how it goes in the end.
>> So I'm trying to figure out what the differences are. Here are my
>> questions so far:
>> We seem to have 8 slots per node. Do you guys know if the same is
>> true on CloudMan? I'm assuming more than one submitted qsub job can
>> run on one node at one time?
> The number of slots per node depends on the type of instance used. CloudMan
> will configure an SGE instance to have as many slots as there are processing
> cores. So, for example, a large instance will have 2 slots, an extra large
> instance will have 4 slots. Each qsub job then gets submitted to one slot.
>> Also is there a way to reserve a certain amount of memory for a job
>> submitted via qsub, or alternatively to request that the job have
>> exclusive access to a node so it keeps all the memory available?
> There are no preconfigured provisions for this in the SGE configuration
> provided by CloudMan. However, this is a vanilla SGE setup so it is entirely
> possible to manually setup the queues as you'd like and have it do the
> various resource reservations. SGE is installed under /opt/sge
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