Guru

Yes please include, in fact they may be all that is needed?  They represent the 
assembled contigs and scaffolds that were linked to the genetic map and this 
represent the chromosomes...   I believe that they contain most of the contigs 
and scaffolds so there is redundancy.  there is one Tc0 that represents the 
unassembled contigs and scaffolds left over after assembling the 10 
pseudochromosomes that represent each of the 10 cacao chromosomes.  Yopu could 
see how this is on the gbrowse at the below website.

Regards

Mark


On Jan 26, 2012, at 10:39 AM, Guru Ananda wrote:

> Dear Mark,
> 
> Sorry for the delay in response.
> We're wondering whether or not to include pseudomolecules (along with contigs 
> and scaffolds) as genomic sequence for cacao genome. Can you kindly clarify 
> this?
> 
> Thanks,
> Guru.
> 
> 
> On Thu, Oct 27, 2011 at 4:08 PM, Mark Guiltinan <m...@psu.edu> wrote:
> Hello Galaxy,
> 
> Would you please perform the following new genome load?
> 
> Theobroma cacao
> 
> All the necessary resource files can be found and downloaded at:
> 
> 
> http://cocoagendb.cirad.fr/gbrowse/download.html
> 
> Thank you
> 
> Mark Guiltinan
> 
> 
> 
> 
> Mark Guiltinan
> Professor of Plant Molecular Biology
> Penn State University                                         
> Department of Horticulture                                    
> 422 Life Sciences Building                                    
> University Park, PA 16802-5807        
> Phone  814 863-7957                   
> m...@psu.edu
> Web Site: http://guiltinanlab.cas.psu.edu
> 
> 
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> -- 
> Graduate student, Bioinformatics and Genomics
> Makova lab/Galaxy team
> Penn State University
> 505 Wartik lab
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> g...@psu.edu
> 

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