Hi Jeremy, Thanks for the help! I can upload fasta data for custom builds (name:'NCI-H209-hg18'; key:'NCI-H209-V1') now. but when I try to use a bed file specific for this custom builds to fetch sequences from this custom genome, it gives error information that no sequences are available for 'NCI-H209-v1'. I might do something wrong, do you know what would be the reason?
Thanks! Pengfei On Fri, Feb 17, 2012 at 7:40 AM, Jeremy Goecks <jeremy.goe...@emory.edu>wrote: > Hi Pengfei and Noa, > > I suspect this was a temporary problem related to software issues that we > encountered yesterday. Please try again and let us know if you're still > having problems. > > Also, note that either a FASTA dataset or a Len file is needed, but not > both. Using a FASTA dataset enables viewing genome data in Trackster. > > Best, > J. > > > On Feb 17, 2012, at 12:00 AM, Noa Sher wrote: > > I also had exactly the same problem yesterday - glad to see that maybe it > wasn't just me. > Happy for help! > Noa > > On 16/02/2012 22:24, Pengfei Yu wrote: > > Dear sir or madam, > > I am using galaxy public server and I am trying to build a custom genome > using the function "custom Builds" in "user" section. > I specified the Name, Key and uploaded the genome fasta file also the > chromosome length file. But when I click "submit", galaxy gave an error > information like that: > "" > *Server Error:* > An error occurred. See the error logs for more information. (Turn debug on > to display exception reports here) > "" > I don't know where to find the error logs and how to turn debug on. Could > you tell me how to fix the problem and upload the custom builds? > Thanks a lot! > > Pengfei > -- > Pengfei Yu > Center of Biophysics and Computational Biology > University of Illinois Urbana-Champaign > Illinois, 61820, US > Cell phone: 217-898-6301 > > > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ > > ___________________________________________________________ > The Galaxy User list should be used for the discussion of > Galaxy analysis and other features on the public server > at usegalaxy.org. Please keep all replies on the list by > using "reply all" in your mail client. For discussion of > local Galaxy instances and the Galaxy source code, please > use the Galaxy Development list: > > http://lists.bx.psu.edu/listinfo/galaxy-dev > > To manage your subscriptions to this and other Galaxy lists, > please use the interface at: > > http://lists.bx.psu.edu/ > > > -- Pengfei Yu Center of Biophysics and Computational Biology University of Illinois Urbana-Champaign Illinois, 61820, US Cell phone: 217-898-6301
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/
