Thanks. I was hoping there was an easier way e.g., selecting the two
workflows and exporting them into a workflow canvas. The workflows are
not too big so manually creating the workflows will probably be the
faster option for now.

On Mon, Mar 19, 2012 at 12:09 PM, Peter Cock <p.j.a.c...@googlemail.com> wrote:
> You forgot to CC the mailin list.
>
>> On Mon, Mar 19, 2012 at 12:02 PM, Peter Cock <p.j.a.c...@googlemail.com> 
>> wrote:
>>> On Mon, Mar 19, 2012 at 4:53 PM, Innocent Onsongo <onson...@umn.edu> wrote:
>>>> Galaxy Team,
>>>>
>>>> I would like to create a workflow by combining portions of two
>>>> different workflows. How do I do this in Galaxy?
>>>>
>>>> Thanks,
>>>> Getiria Onsongo
>>>
>>> One outline solution is as follows:
>>>
>>> (1) Start with an empty history.
>>> (2) Upload/import the input files
>>> (3) Run first workflow
>>> (4) Run second workflow
>>> (5) Save history as a new combined workflow
>>> (6) Edit new workflow to remove any redundant steps
>>>
>>> This is of course limited in functionality compared to what
>>> might be possible in a future version of Galaxy.
>>>
>>> Peter
>
> On Mon, Mar 19, 2012 at 5:05 PM, Innocent Onsongo <onson...@umn.edu> wrote:
>> I was hoping I could avoid re-running the two workflows since they
>> both take a relatively long time to run. Looks like I might have to do
>> it after all.
>
> Use smaller datasets? Ideally you would have a small test set
> covering positive and negative example.
>
> Or you can manually create the workflow in the workflow editor,
> starting from one of the existing ones and adding the new tools
> and connecting them together.
>
> Peter



-- 
Getiria Onsongo, Ph.D.
Bioinformatics Research Scientist
Masonic Cancer Center,
University of Minnesota
Minneapolis, MN 55455
Phone: 612-625-0101
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