I was wondering if there is any tool on Galaxy were I can obtain a table
with how many reads have been mapped to a given sample and to a given gene
(for example, use a Tophat output and use a GFF file to obtain the table).
I am using HTSeq to get it (htseq-count). There is also GenomicRanges and
easyRNASeq packages in bioconductor.
Thank you.

The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:


To manage your subscriptions to this and other Galaxy lists,
please use the interface at:


Reply via email to