Hi, I was wondering if there is any tool on Galaxy were I can obtain a table with how many reads have been mapped to a given sample and to a given gene (for example, use a Tophat output and use a GFF file to obtain the table). I am using HTSeq to get it (htseq-count). There is also GenomicRanges and easyRNASeq packages in bioconductor. Thank you.
Luciano
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