Hi Vasu,
The three primary megablast databases available on the public main
Galaxy instance are comprised of individual fragments/sequences of
different types from many species (not assembled genomes):
http://user.list.galaxyproject.org/Question-about-megablast-td4543260.html
If you want to use megablast to map against specific assembled genomes,
then using a local or (better) cloud instance is recommended. In your
own instance, the individual genomes would be set up the way that the
'phiX174' is set up on main.
To get started, please see: http://getgalaxy.org
Does this address your question? If not, perhaps you could explain more
what your goal is and we can try to offer help or confirm that this is
the best path?
Regards,
Jen
Galaxy team
On 4/10/12 11:04 AM, shamsher jagat wrote:
Hi,
I am using megablast and was wondering how can I get chromosome number
and coordinates of its hits.
Thanks
Shamesher
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___________________________________________________________
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
http://lists.bx.psu.edu/listinfo/galaxy-dev
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
http://lists.bx.psu.edu/
