I changed it to bedgraph and can no longer view in UCSC (the button to view in UCSC was not there anymore). I had it in bed format subsequently and put in a header. I was looking at the bedgraph/wiggle header documentation on UCSC but don't find any that describes displaying scores in histogram format. I saw that we can change colour the intensity of the bars based on scores though.
Jose On Thu, May 10, 2012 at 10:27 PM, James Robinson < jrobi...@broadinstitute.org> wrote: > Hi Jose, > > What you have described is a "bedgraph" file. Perhaps changing the file > extension to "bedgraph" will be enough, if not you might be required to > enter a track line. See UCSC for details. > > On Thu, May 10, 2012 at 9:04 PM, Xianrong Wong <won...@gmail.com> wrote: > >> Hello, I have a bed file in this format: chr# start end scores. I tried >> to view it in ucsc main but it showed only where the fragments are(based on >> the start and end coordinates) with numerical scores beside each fragment. >> How do I view the file as a histogram format? What format will I need to >> convert the file to and where can I do the conversion? Any advise is >> greatly appreciated! >> >> Jose >> ___________________________________________________________ >> The Galaxy User list should be used for the discussion of >> Galaxy analysis and other features on the public server >> at usegalaxy.org. Please keep all replies on the list by >> using "reply all" in your mail client. For discussion of >> local Galaxy instances and the Galaxy source code, please >> use the Galaxy Development list: >> >> http://lists.bx.psu.edu/listinfo/galaxy-dev >> >> To manage your subscriptions to this and other Galaxy lists, >> please use the interface at: >> >> http://lists.bx.psu.edu/ >> > >
___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/