On Wed, May 9, 2012 at 1:09 AM, Zeeshan Ali Shah <zas...@pdc.kth.se> wrote:
> Hi, I was following screenshot and after adding workflow
> Upon running it is mentioning that /mnt/galaxyIndices/hg19/bwa/base/hg19
> which does not exist .. i have confirmed that after login to instance
> due to this reason it is unable to pick FASTQ file.
> any hint ?
The mentioned file does not exist but there should be a group of files that
start with that particular name. The concept is described on the general
Galaxy setup page: http://wiki.g2.bx.psu.edu/Admin/NGS%20Local%20Setup
With that, could you describe you issue a bit better? I'm not sure what you
mean by not being able to 'pick' a FASTQ file.
> Also. When we newly create cloud man from AMI dated 22nd March 2011, Does
> it make sense to update Galxy via admin ? or just run it with out update..
At this point, this is actually no advisable because the process is likely
to fail (there have been some structural changes to how Galaxy in installed
that the automated process does not cover quite yet). However, a new image
is being prepared with an updated Galaxy and should be available soon.
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> To manage your subscriptions to this and other Galaxy lists,
> please use the interface at:
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at: