Hi,
I have used for the first time this tool, picard bam statistic.
I have aligned my reads to a custom genome (7904 bp long) and had the
following output:

length= 7904 Aligned= 44 Unaligned= 0

Why is unaligned =0.

I had the unaligned =0 also when aligning agaist hg19...

thanks,
ib
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