Messages by Thread
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[galaxy-user] FreeBayes repeated error
Dalgard, Clifton
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[galaxy-user] server down?
DEDRICK
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[galaxy-user] adding D. yakuba reference genome
Stern PhD, David L
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[galaxy-user] GFF not recognized in CUFFLINK
Qian Dong
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[galaxy-user] Galaxy for SAGESeq
Sujoy Ghosh
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[galaxy-user] public repository for workflows?
Kenny Billiau
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[galaxy-user] extract genome sequence
Yan He
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[galaxy-user] FTP Upload Error
Amanda Jones
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[galaxy-user] Galaxy September 20, 2012 Distribution & News Brief
Jennifer Jackson
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[galaxy-user] How much FPKM can be take into consideration when compare gene expression
Du, Jianguang
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[galaxy-user] Cloudman share string not working
greg
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[galaxy-user] Error executing tool: Unable to create output dataset: object store is full
Angela Inácio
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[galaxy-user] Galaxy error: can't fine fasta file
Kenneth R. Auerbach
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[galaxy-user] Why doesn't bowtie in galaxy accepting colorspace reads directly?
Praveen Raj Somarajan
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[galaxy-user] problem uploading via FTP server
L.M. Slot
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[galaxy-user] none availability genome.fa files through mapping modules on local server
Sandrine Imbeaud
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[galaxy-user] No output produced.....
Neil.Burdett
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[galaxy-user] Does Tophat output *.accepted hits file contain headers?
Du, Jianguang
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[galaxy-user] Galaxy CloudMan - Nodes can't make their own qsub calls?
greg
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[galaxy-user] How can I extract sequence information fromm cuffdiff files?
Humberto Boncristiani
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[galaxy-user] Unable to BAM data on UCSC or Ensembl browsers
Joachim Jacob
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[galaxy-user] Using tool on input data set
kauerbach
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[galaxy-user] Amplicon analysis with Galaxy
Juha-Pekka Pursiheimo
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[galaxy-user] Peak-calling with MACS from .bowtie file
Sébastien Vigneau
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[galaxy-user] MACS out put files from Galaxy
peter scot
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[galaxy-user] Fwd: Galaxy: RNA-seq analysis problems
James Taylor
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[galaxy-user] Tophat results
Xiefan Fang
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[galaxy-user] Counting RNA-seq reads per class.
Mohammad Heydarian
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[galaxy-user] Possible to share with non-galaxy users on a login-required
Joachim Jacob
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[galaxy-user] How to rotate Galaxy log file
Lukasz Lacinski
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[galaxy-user] Galaxy September 7, 2012 Distribution & News Brief
Jennifer Jackson
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[galaxy-user] Number of mismatches allowed in the initial read mapping
Du, Jianguang
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[galaxy-user] Tophat settings
Du, Jianguang
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[galaxy-user] Tools won't go away even after deleting it from tool_conf.xml
Makis Ladoukakis
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[galaxy-user] Please help to understand the square root of Jensen-Shannon divergence
Du, Jianguang
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[galaxy-user] git mirror
Luca Pireddu
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[galaxy-user] Downloading a zip file .......
Neil.Burdett
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[galaxy-user] MACS- Duplicate reads removal
Yanina Bogliotti
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[galaxy-user] problem running MACS on Galaxy
Amit Pande
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[galaxy-user] September 2012 Galaxy Update
Dave Clements
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[galaxy-user] No reference genome listed for NGS: Mapping Map with TMAP for Ion Torrent
Catherine Dumur
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[galaxy-user] Should I "use raw junction" and "Only look for supplied junctions"
Du, Jianguang
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[galaxy-user] How to decide if the deference is significant
Du, Jianguang
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[galaxy-user] Calling SNP
Francesco Vitiello
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[galaxy-user] Please help with the settings for Cufflink, Cuffmerge and Cuffdiff
Du, Jianguang
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[galaxy-user] Galaxy-France -- Communauté française de Galaxy (French Galaxy Community)
Dave Clements
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[galaxy-user] Text Manipulation
Jennifer Jackson
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[galaxy-user] Please help me check the quality of the Tophat mapping to reference genome
Du, Jianguang
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[galaxy-user] interupted running jobs restart
petr
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[galaxy-user] Is there web-based CummeRbund?
Du, Jianguang
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[galaxy-user] Is tss_id unique for each transcript?
Du, Jianguang
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[galaxy-user] regarding upload of data locally on galaxy
Amit Pande
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[galaxy-user] Extract Spliced Transcripts from Cuffmerge
Hanson, Sara J
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[galaxy-user] Should I use iGenomes verson of a reference GTF for Tophat?
Du, Jianguang
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[galaxy-user] What is the minimum Quality should I set for Filter FASTQ?
Du, Jianguang
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[galaxy-user] How much can I trimm my reads
Du, Jianguang
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[galaxy-user] Installing galaxy with Apache ...
Neil.Burdett
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[galaxy-user] Installing Galaxy and Hooking into a SGE Cluster
mailing list
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[galaxy-user] LimitInternalRecursion
Adhemar
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[galaxy-user] URL file upload... and file upload renamed
Neil.Burdett
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[galaxy-user] How to upload multiple files......
Neil.Burdett
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[galaxy-user] How to find the alternatively spliced segment of genes in Cuffdiff output
Du, Jianguang
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[galaxy-user] Files uploaded via FTP - 530 Sorry, the maximum number of clients (3) for this user are already connected.
Julie Rodor
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[galaxy-user] inconsistent cuffdiff
i b
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[galaxy-user] tophat deletions output
i b
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[galaxy-user] inconsistent cuffdiff output-corrected question
i b
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[galaxy-user] inconsistent cuffdiff output
i b
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[galaxy-user] From gff to gff3?
Yan He
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[galaxy-user] Galaxy-installed - Localhost Not opening
Lizex Husselmann
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[galaxy-user] To access galaxy over the network
Masaki MS
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[galaxy-user] run Bowtie to estimate Mean Inner Distance between Mate Pairs
Du, Jianguang
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[galaxy-user] Minimum length of read segments
Du, Jianguang
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[galaxy-user] Counting intervals in one file overlapping intervals in another file - what are the hidden settings?
Mohammad Heydarian
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Re: [galaxy-user] galaxy-user Digest, Vol 74, Issue 15
De Kumar, Bony
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[galaxy-user] Cuffdiff errors
Yan He
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[galaxy-user] Use Own Junctions or not
Du, Jianguang
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[galaxy-user] Do I need to allow indel search?
Du, Jianguang
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[galaxy-user] Can I convert paired-end datasets into single end ones?
Du, Jianguang