I have had it happen occasionally, but didn't pay attention to the details. Perhaps I forget to put --reload sometimes. Also, it seems that sometimes the Galaxy processes do not all stop with --stop-daemon. I wrote the text below as a recipe for people in my lab to restart in those situations, and I copied it here...


On 10/19/2012 8:24 AM, Nate Coraor wrote:
On Oct 18, 2012, at 1:43 AM, Todd Oakley wrote:

Yes, daemon/stop-daemon is the best way.  However, to stop a process that was 
not started with --daemon, this is what I do:

  ps aux | grep galaxy

Identify the process numbers for 3 Galaxy processes, which will change every 
time Galaxy is restarted.
For example this line:
  galaxy   11638  0.0  0.0  63856   988 ?        S    Nov10   0:00 /bin/sh 
./run.sh --reload

indicates the process has a number of 11638.
The 3 processes look like:
        • /bin/sh ./run.sh --reload
        • python ./scripts/paster.py serve universe_wsgi.ini --reload
        • /home/galaxy/bin/python ./scripts/paster.py serve universe_wsgi.ini 
--reload
Next, kill the three processes with this command:
  kill -9 <ID1> <ID2> <ID3>
Hi Todd,

Are you unable to Ctrl+C when using --reload?  Using --reload is actually my 
workaround for this problem.

--nate





On Oct 17, 2012, at 10:17 PM, Enis Afgan wrote:

With a certain version of Python there's been an issue stopping Galaxy using 
ctrl+C. You can use 'sh run.sh --daemon' to have the process run in the 
background and then 'sh run.sh --stop-damemon' to stop it.

Hope this helps,
Enis

On Thu, Oct 18, 2012 at 4:12 PM, Sachit Adhikari <sachit.techner...@gmail.com> 
wrote:
Hello Everyone. Ctrl+C or Ctrl+D doesn't stop the Galaxy server. In local 
machine, I need to close the terminal and restart the terminal again. However, 
in server I integrated several tools, now I need to restart the server to test 
it. I used ./run.sh --reload doesn't restart the server and I can't stop the 
server. How can I stop or restart Galaxy in the real working server? Thanks
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--

***************************************
Todd Oakley, Professor
Ecology Evolution and Marine Biology
University of California, Santa Barbara
Santa Barbara, CA 93106 USA
***************************************

Lab Website <http://labs.eemb.ucsb.edu/oakley/todd/>
Twitter: @UCSB_OakleyLab

*Recent Papers: *

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