Hi:

Alternatively you can note the SRA sequence identified and use Galaxy's EBI-SRA 
datasource to import data directly.

a.

Anton Nekrutenko
http://www.galaxyproject.org

On Jan 31, 2013, at 8:58 AM, Björn Grüning wrote:

> Hi,
> 
> you can try to import your SRA directly as fastq files. Paste that URL
> in the upload tool and modify the XXXX number.
> 
> http://trace.ncbi.nlm.nih.gov/Traces/sra/sra.cgi?cmd=dload&run_list=SRRXXXXXX&format=fastq
> 
> Hope that helps,
> Bjoern
> 
>> Hello,  I would like to download some GEO files that complement my own
>> research with zebrafish embryos but apparently GEO is now only
>> providing .sra flles.
>> 
>> For a not very experienced unix person, does Galaxy have a tool for
>> this or is there a clear description somewhere else of how to do it
>> for someone who is not a bioinformaticist?
>> 
>> Thanks,
>> 
>> el linney
>> Duke University Medical Center
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> 
> -- 
> Björn Grüning
> Albert-Ludwigs-Universität Freiburg
> Institute of Pharmaceutical Sciences
> Pharmaceutical Bioinformatics
> Hermann-Herder-Strasse 9
> D-79104 Freiburg i. Br.
> 
> Tel.:  +49 761 203-4872
> Fax.:  +49 761 203-97769
> E-Mail: bjoern.gruen...@pharmazie.uni-freiburg.de
> Web: http://www.pharmaceutical-bioinformatics.org/
> 
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