Hi,

I am running cufflinks and cuffdiff using Galaxy. I am however wondering if it 
is not supposed to be output files from cuffdiff regarding each replicate. 
Anyone know why those (read.group-files) are not there, or when they will be if 
it is because of the version used in Galaxy. I find it very valuable to have 
those to be able to see intra/inter-group features in downstream analysis.

Thanks,
Johanna

......................................................................................................................................................
Johanna Sandgren, PhD
Department of Oncology-Pathology
CCK, Karolinska Institutet
SE-171 76 Stockholm, Sweden
+46-8-517 721 35 (office),
+46-8- 321047(fax), +46-708 388476 (mobile)

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