I have aGalaxy toolwith some R code which is split up into a few files, which are loaded by a "master R script", which orcestrates and executes the whole thing.

I realize that when the master script ("run.R" in my case) is run, it will not find the other files, since it is itself moved away to a temporary working directory (something like ".../galaxy/database/job_working_directory/000/165").

Is there any "standard way" of dealing with this, any special toolconfig syntax etc? ... or do I have to just hard code the absolute paths to the extra files in my script? :|

Best Regards
// Samuel

Developer at SNIC-UPPMAX www.uppmax.uu.se
Developer at Dept of Pharm Biosciences www.farmbio.uu.se

The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:


To manage your subscriptions to this and other Galaxy lists,
please use the interface at:


Reply via email to