I performed my mapping using tophat - cufflink - cuffmerge - cuffdiff.
With the information I have for my analysis so far, I can reannotate wrong
genes, check for correct splicing etc. However, I would like to perform
some analysis post-alignment, like for example samples clustering, volcano
plot, heat maps etc. I guess I can't do this kind of analysis with Galaxy
(I am using the free version on line on my Windows laptop) since I haven't
found anything in the tools section. Does anyone know a software that I
could use in windows with the data obtained in Galaxy?
Any suggestion is really appreciated.
Giuseppe Ianiri, Ph.D.
Division of Cell Biology and Biophysics
School of Biological Sciences
5100 Rockhill Road
University of Missouri-Kansas City
Kansas City, MO 64110
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
To search Galaxy mailing lists use the unified search at: