I performed my mapping using tophat - cufflink - cuffmerge - cuffdiff.
With the information I have for my analysis so far, I can reannotate wrong
genes, check for correct splicing etc. However, I would like to perform
some analysis post-alignment, like for example samples clustering, volcano
plot, heat maps etc. I guess I can't do this kind of analysis with Galaxy
(I am using the free version on line on my Windows laptop) since I haven't
found anything in the tools section. Does anyone know a software that I
could use in windows with the data obtained in Galaxy?
Any suggestion is really appreciated.


Giuseppe Ianiri, Ph.D.
Division of Cell Biology and Biophysics
School of Biological Sciences
5100 Rockhill Road
University of Missouri-Kansas City
Kansas City, MO 64110
Email: iani...@umkc.edu
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