I have looked through the metagenome tools and looked at the tutorials, and was wondering how one could pull out reads that contain specific protein domains or COGS. Blastx is not possible (?) but megablast could get GI codes, and these could potentially be used to retrieve CDD information. I just can't see the way to do this on galaxy. Any suggestions would be greatly appreciated.
Mike DS Sent from my iPhone4 ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
