Hi Tomaž,

The script depends on galaxy libraries, but could probably be set up
standalone if you made the appropriate libraries available -- the source is
distributed with galaxy, see
https://bitbucket.org/galaxy/galaxy-central/src/tip/tools/fastq/fastq_trimmer_by_quality.py?at=default

-Dannon



On Wed, Apr 17, 2013 at 7:30 AM, Tomaz Rijavec <to...@ifb.si> wrote:

> Dear "Galaxy Team",
>
> I have a question regarding the fastq quality trimmer (by sliding window)
> tool. What is the script running behind it? Is it a modified version of the
> fastx_quality_trimmer found in the fastx tools package? Is there a
> standalone version of it one can set up locally and run it from the command
> line.
> Thanks for all the info you can provide.
>
> best regards,
> Tomaž
>
>
>
>
>
> --
> Lep pozdrav / Best Regards,
> dr. Tomaž Rijavec
> --------------------------------------------------------
> Inštitut za fizikalno biologijo d.o.o. / Toplarniška ulica 19, 1000
> Ljubljana / T: 01 587 54 70 / www.ifb.si
> Institute of Physical Biology / Toplarniška ulica 19, SI-1000 Ljubljana,
> Slovenia / T: +3861 587 54 70 / www.ifb.si
>
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