Yes, it's the "Filter FASTQ reads by quality score and length" in left-hand pane. There were actually four separate runs on four datasets. Two of them finished in about a day but the other two have been running for about 4 days. The input files range in size from 6GB - 11GB
Today, the two 4-day jobs both aborted with error message: Job output not returned by PBS: the output datasets were deleted while the job was running, the job was manually dequeued or there was a cluster error. ------------------------------------------- Richard > -----Original Message----- > From: Peter Cock [mailto:p.j.a.c...@googlemail.com] > Sent: Thursday, May 09, 2013 7:46 AM > To: Casey,Richard > Cc: galaxy-u...@bx.psu.edu > Subject: Re: [galaxy-user] Filter Fastq > > On Thu, May 9, 2013 at 12:27 PM, Casey,Richard > <richard.ca...@colostate.edu> wrote: > > Hi, > > > > We have two Filter FASTQ jobs running on the Galaxy public server. > > Both jobs have been running for more than four days. This seems like > > an excessive amount of runtime. Do Filter FASTQ jobs normally take > > this long to run? > > Which FASTQ filtering tool exactly are you referring too? The one called > "Filter FASTQ reads by quality score and length" in the left hand column, tool > ID fastq_filter? > > How big were the input files? > > Peter ___________________________________________________________ The Galaxy User list should be used for the discussion of Galaxy analysis and other features on the public server at usegalaxy.org. Please keep all replies on the list by using "reply all" in your mail client. For discussion of local Galaxy instances and the Galaxy source code, please use the Galaxy Development list: http://lists.bx.psu.edu/listinfo/galaxy-dev To manage your subscriptions to this and other Galaxy lists, please use the interface at: http://lists.bx.psu.edu/ To search Galaxy mailing lists use the unified search at: http://galaxyproject.org/search/mailinglists/
