Joachim , Thanks that is exactly I was looking as Qualimap is exhausting memory.
Thanks Geert. On Fri, Sep 6, 2013 at 12:32 AM, Joachim Jacob | VIB | <joachim.ja...@vib.be > wrote: > Hi Shamsher, > > > Another alternative is to use bamqc from the qualimap suite. The wrapper > you can find at: > http://toolshed.g2.bx.psu.edu/**view/joachim-jacob/qualimap_**suite<http://toolshed.g2.bx.psu.edu/view/joachim-jacob/qualimap_suite> > > You need to install this tool in a local Galaxy, with the qualimap suite > installed and perl (see README). > > > Cheers, > Joachim > > > > On 09/04/2013 09:59 PM, shamsher jagat wrote: >> > > I am looking for a tool to perform QC of Bam file especially following >> functions: >> 1. BAsic information and stat. >> 2. Coverage across reference features- gene/ transcripts. >> Is it possible to do it in Galaxy? >> Thanks >> > > -- > Joachim Jacob > Contact details: > http://www.bits.vib.be/index.**php/about/80-team<http://www.bits.vib.be/index.php/about/80-team> > > >
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