Joachim , Thanks that is exactly I was looking as Qualimap is exhausting
On Fri, Sep 6, 2013 at 12:32 AM, Joachim Jacob | VIB | <joachim.ja...@vib.be
> Hi Shamsher,
> Another alternative is to use bamqc from the qualimap suite. The wrapper
> you can find at:
> You need to install this tool in a local Galaxy, with the qualimap suite
> installed and perl (see README).
> On 09/04/2013 09:59 PM, shamsher jagat wrote:
> I am looking for a tool to perform QC of Bam file especially following
>> 1. BAsic information and stat.
>> 2. Coverage across reference features- gene/ transcripts.
>> Is it possible to do it in Galaxy?
> Joachim Jacob
> Contact details:
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