I am fairly new to galaxy and I am trying to use bowtie2 to map my reads
against a custom genome (specifically a ribosomal RNA fasta file). I have
formatted the file as suggested in the Galaxywiki ect and I am still
getting the following message: Job output not returned by PBS: the output
datasets were deleted while the job was running, the job was manually
dequeued or there was a cluster error.

Any help would me much appreciated!

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