Hi Lilach,

Yes, BAM files are sorted and indexed when they are uploaded. Just load the .bam, not the .bam.bai when using FTP.


Sorry for the delayed reply!

Jen
Galaxy team

On 8/25/13 3:14 AM, lilach noy wrote:
hello all,

Does anyone know if in order to use Slice bam I need to sort the bam file first or does galaxy automatically sort any bam file uploaded?

Many thanks,
Lilach Noy


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