I don't undestand how to use the tool "Stitch MAF blocks". I update a small bed
file and now I need to run this tool, I don't understand the next step. I'm
searching for Novel Linc in some RNA-seq data and I found the lncRscan tool
(http://code.google.com/p/lncrscan/wiki/example) and now I have to use "Stitch
The point is: I update the bed file, I select Fetch Alignments -> Stitch MAF
blocks, and then I can do nothing, I can only choose among "locally cached
alignments" and "alignments in your history". But MAF type/MAF file remain
empty, in any case.
Can someone be so gentle to solve my problem? Do I need to download a MAF file?
Is it normally on Galaxy server, but now it is down? How can I produce a MAF
file selecting only some species (29 mammals)?
Thank you really much.
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