I don't undestand how to use the tool "Stitch MAF blocks". I update a small bed 
file and now I need to run this tool, I don't understand the next step. I'm 
searching for Novel Linc in some RNA-seq data and I found the lncRscan tool 
(http://code.google.com/p/lncrscan/wiki/example) and now I have to use "Stitch 
MAF blocks".

The point is: I update the bed file, I select Fetch Alignments -> Stitch MAF 
blocks, and then I can do nothing, I can only choose among "locally cached 
alignments" and "alignments in your history". But MAF type/MAF file remain 
empty, in any case.

Can someone be so gentle to solve my problem? Do I need to download a MAF file? 
Is it normally on Galaxy server, but now it is down? How can I produce a MAF 
file selecting only some species (29 mammals)?

Thank you really much.

The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:


To manage your subscriptions to this and other Galaxy lists,
please use the interface at:


To search Galaxy mailing lists use the unified search at:


Reply via email to