I minor annoyance that I had found with the current implementation of "Tophat 
for Illumina (version 1.5.0)" in the public usegalaxy.org site:

When you submit sequences for alignment, the dropdown list of available genomes 
gives 2 dog genome choices - BUT both are labeled the same - "Dog(Canis lupus 
familiaris): canFam2".

After trial and error I found that the second (lower on the list) choice is 
actually "Dog(Canis lupus familiaris): canFam3.1".

Hopefully this can be corrected at some point - maybe when the next release 
comes out from the Broad.


Michael H. Court, BVSc, PhD, Diplomate ACVA
Professor and William R. Jones Endowed Chair
Individualized Medicine Program
Pharmacogenomics Laboratory
Department of Veterinary Clinical Sciences
College of Veterinary Medicine, Washington State University
100 Grimes Way, Pullman, WA 99164-6610
Office: 509-335-0817   Cell: 774-287-7082  Fax: 509-335-0880

<<inline: image002.png>>

The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org.  Please keep all replies on the list by
using "reply all" in your mail client.  For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:


To manage your subscriptions to this and other Galaxy lists,
please use the interface at:


To search Galaxy mailing lists use the unified search at:


Reply via email to