Messages by Date
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2013/12/04
Re: [galaxy-user] .Bam file upload and use problem
Jennifer Jackson
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2013/12/04
Re: [galaxy-user] Question on uploading and use .bam files
Jennifer Jackson
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2013/12/04
[galaxy-user] Question on uploading and use .bam files
Lu, Yuan (MU-Student)
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2013/12/04
[galaxy-user] .Bam file upload and use problem
Lu, Yuan (MU-Student)
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2013/12/04
Re: [galaxy-user] Is there a problem with jobs on Galaxy today?
Jennifer Jackson
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2013/12/04
[galaxy-user] Is there a problem with jobs on Galaxy today?
Ruth Eberhardt
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2013/12/04
Re: [galaxy-user] jobs not running
Nate Coraor
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2013/12/04
[galaxy-user] jobs not running
Ruth Eberhardt
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2013/12/03
Re: [galaxy-user] Peak annotation with Galaxy
Jennifer Jackson
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2013/12/03
Re: [galaxy-user] Peak annotation with Galaxy
zod
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2013/12/03
Re: [galaxy-user] How to know callable loci after variant calling in GATK ?
Fabrice Besnard
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2013/12/02
Re: [galaxy-user] Peak annotation with Galaxy
Jennifer Jackson
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2013/12/02
[galaxy-user] Peak annotation with Galaxy
Wooi Lim
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2013/12/02
Re: [galaxy-user] How to know callable loci after variant calling in GATK ?
Jennifer Jackson
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2013/12/02
[galaxy-user] GCC2014 Training Day: Topic Nomination is now open
Dave Clements
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2013/12/02
Re: [galaxy-user] tophat issues
Jennifer Jackson
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2013/12/02
Re: [galaxy-user] FW: [galaxy-bugs] Galaxy tool error report from b...@leeds.ac.uk
Jennifer Jackson
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2013/12/02
Re: [galaxy-user] Problem loading BAM into IGV browser - invalid GZIP header error message
Vosberg, Sebastian
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2013/12/02
Re: [galaxy-user] ChIP-Seq Normalization to total number of reads
Björn Grüning
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2013/12/01
[galaxy-user] December 2013 Galaxy Update
Dave Clements
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2013/12/01
[galaxy-user] ChIP-Seq Normalization to total number of reads
Wooi Lim
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2013/11/30
[galaxy-user] tophat issues
miroslav.sotak
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2013/11/30
[galaxy-user] FW: [galaxy-bugs] Galaxy tool error report from b...@leeds.ac.uk
Irene Bassano
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2013/11/29
Re: [galaxy-user] Problem loading BAM into IGV browser - invalid GZIP header error message
Jim Johnson
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2013/11/29
Re: [galaxy-user] Problem loading BAM into IGV browser - invalid GZIP header error message
Jim Robinson
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2013/11/29
[galaxy-user] Problem loading BAM into IGV browser - invalid GZIP header error message
Vosberg, Sebastian
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2013/11/27
Re: [galaxy-user] human genome latest annotaiton
Jennifer Jackson
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2013/11/27
[galaxy-user] human genome latest annotaiton
Irene Bassano
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2013/11/27
[galaxy-user] Problems with Picard and GATK tools
garzetti
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2013/11/26
Re: [galaxy-user] Cufflinks returned 0 value in all RPKMs
Jennifer Jackson
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2013/11/25
Re: [galaxy-user] Implement GATK tool "Callable Loci" in Galaxy?
Jennifer Jackson
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2013/11/25
Re: [galaxy-user] Transcriptome Hypericum perforatum
Jennifer Jackson
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2013/11/25
Re: [galaxy-user] Transcriptome Hypericum perforatum
Martin Čech
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2013/11/25
[galaxy-user] Transcriptome Hypericum perforatum
miroslav.sotak
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2013/11/25
Re: [galaxy-user] help for trim sequences
Jennifer Jackson
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2013/11/25
Re: [galaxy-user] Identifying Genes
Jennifer Jackson
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2013/11/25
[galaxy-user] How to know callable loci after variant calling in GATK ?
Fabrice Besnard
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2013/11/25
[galaxy-user] Identifying Genes
Loupe, Jacob M.
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2013/11/25
Re: [galaxy-user] help for trim sequences
Jennifer Jackson
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2013/11/25
Re: [galaxy-user] help for trim sequences
Jennifer Jackson
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2013/11/25
Re: [galaxy-user] help for trim sequences
Geert Vandeweyer
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2013/11/23
Re: [galaxy-user] help for trim sequences
Peter Cock
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2013/11/22
Re: [galaxy-user] help for trim sequences
Jennifer Jackson
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2013/11/20
Re: [galaxy-user] Read_group_tracking files are not enough for cummerbund visualisations on replicates?
Jennifer Jackson
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2013/11/20
Re: [galaxy-user] Cufflinks returned 0 value in all RPKMs
Jennifer Jackson
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2013/11/20
Re: [galaxy-user] Quantmap output issue (chemical names are truncated and cannot be differentiable from each other)
Jennifer Jackson
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2013/11/20
[galaxy-user] Quantmap output issue (chemical names are truncated and cannot be differentiable from each other)
Hsieh, Jui-Hua (NIH/NIEHS) [E]
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2013/11/20
Re: [galaxy-user] compute an expression on every row question
Jennifer Jackson
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2013/11/20
[galaxy-user] Read_group_tracking files are not enough for cummerbund visualisations on replicates?
Aranday Cortes, Elihu
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2013/11/20
[galaxy-user] Cufflinks returned 0 value in all RPKMs
Ly, Dao
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2013/11/20
[galaxy-user] Implement GATK tool "Callable Loci" in Galaxy?
Fabrice Besnard
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2013/11/19
Re: [galaxy-user] new cuffdiff with readgroup problem
Johanna Sandgren
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2013/11/18
[galaxy-user] compute an expression on every row question
Tobias Hohenauer
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2013/11/18
[galaxy-user] help for trim sequences
Seung Hee Cho
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2013/11/18
[galaxy-user] Mean inner distance
Jennifer Jackson
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2013/11/18
Re: [galaxy-user] bowtie2
Jennifer Jackson
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2013/11/18
Re: [galaxy-user] FW: Tophat/Cuff parameters
Irene Bassano
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2013/11/18
Re: [galaxy-user] Blast on Galaxy?
Jorge Braun
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2013/11/17
Re: [galaxy-user] Blast on Galaxy?
Björn Grüning
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2013/11/17
[galaxy-user] Blast on Galaxy?
Jorge Braun
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2013/11/16
[galaxy-user] bowtie2
mark.rose
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2013/11/16
Re: [galaxy-user] FW: Tophat/Cuff parameters
Jennifer Jackson
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2013/11/15
Re: [galaxy-user] new cuffdiff with readgroup problem
Jennifer Jackson
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2013/11/15
Re: [galaxy-user] how to add openstack in biocloudcentral ?
Jennifer Jackson
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2013/11/15
Re: [galaxy-user] FW: Tophat/Cuff parameters
Jennifer Jackson
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2013/11/15
Re: [galaxy-user] how to add openstack in biocloudcentral ?
Zeeshan Ali Shah
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2013/11/15
[galaxy-user] FW: Tophat/Cuff parameters
Irene Bassano
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2013/11/15
[galaxy-user] how to add openstack in biocloudcentral ?
Zeeshan Ali Shah
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2013/11/15
Re: [galaxy-user] Cuffdiff question
clare Hardman
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2013/11/15
Re: [galaxy-user] Cuffdiff question
Noa.sher
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2013/11/14
Re: [galaxy-user] new cuffdiff with readgroup problem
Jennifer Jackson
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2013/11/14
Re: [galaxy-user] Setting a queue for torque submission
Jennifer Jackson
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2013/11/14
[galaxy-user] Tophat/Cuff parameters
Jennifer Jackson
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2013/11/14
Re: [galaxy-user] Cuffdiff question
Noa Sher
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2013/11/14
[galaxy-user] Setting a queue for torque submission
Xian Su
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2013/11/14
[galaxy-user] Cuffdiff question
clare Hardman
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2013/11/13
Re: [galaxy-user] make publish histories only available to specific users
Jennifer Jackson
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2013/11/12
[galaxy-user] make publish histories only available to specific users
mark.rose
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2013/11/12
[galaxy-user] Cuffdiff question
Jennifer Jackson
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2013/11/12
Re: [galaxy-user] new cuffdiff with readgroup problem
Johanna Sandgren
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2013/11/11
Re: [galaxy-user] Botryllus genome
Jennifer Jackson
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2013/11/11
Re: [galaxy-user] SNP finding
Nate Coraor
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2013/11/11
Re: [galaxy-user] SNP finding
Jennifer Jackson
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2013/11/11
Re: [galaxy-user] SNP finding
Mark Lindsay
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2013/11/08
Re: [galaxy-user] Botryllus genome
Enis Afgan
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2013/11/08
Re: [galaxy-user] Tophat2 (version 0.6)
Jennifer Jackson
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2013/11/08
Re: [galaxy-user] How to lower disc usage in order to resume workflow
Jennifer Jackson
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2013/11/08
Re: [galaxy-user] multiple output tool in workflow
Jennifer Jackson
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2013/11/08
[galaxy-user] Tophat2 (version 0.6)
Roberta Galletti
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2013/11/08
[galaxy-user] How to lower disc usage in order to resume workflow
Chris Farnet
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2013/11/08
[galaxy-user] multiple output tool in workflow
Jun Fan
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2013/11/08
Re: [galaxy-user] Pb with ftp connexion (FileZilla)
Nate Coraor
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2013/11/08
[galaxy-user] Pb with ftp connexion (FileZilla)
Fabrice Besnard
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2013/11/07
Re: [galaxy-user] How do I import protein coding genes location from UCSC?
Jennifer Jackson
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2013/11/07
Re: [galaxy-user] Galaxy Pages - importing/downloading embedded data.
Mohammad Heydarian
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2013/11/07
Re: [galaxy-user] Galaxy Pages - importing/downloading embedded data.
Jennifer Jackson
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2013/11/07
[galaxy-user] How do I import protein coding genes location from UCSC?
Himanshu Sharma
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2013/11/07
[galaxy-user] Galaxy Pages - importing/downloading embedded data.
Mohammad Heydarian
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2013/11/07
Re: [galaxy-user] conditional statement in compute tool
Jennifer Jackson
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2013/11/07
[galaxy-user] conditional statement in compute tool
Leontovich, Alexey A., Ph.D.
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2013/11/07
Re: [galaxy-user] Bowtie raw input
Jonathan Glass
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2013/11/07
Re: [galaxy-user] problems with TOPHAT in Galaxy
Jennifer Jackson
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2013/11/07
Re: [galaxy-user] Contents of a SAM file
Mohammad Heydarian
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2013/11/07
Re: [galaxy-user] Contents of a SAM file
Benjamin Osei-agyeman
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2013/11/07
Re: [galaxy-user] Bowtie raw input
Jennifer Jackson
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2013/11/07
Re: [galaxy-user] Coding and non coding exons
Jennifer Jackson
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2013/11/07
[galaxy-user] problems with TOPHAT in Galaxy
Amit Pande
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2013/11/07
[galaxy-user] Bowtie raw input
Jonathan Glass
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2013/11/07
Re: [galaxy-user] Samtools Mpileup output
Fabrice Besnard
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2013/11/07
Re: [galaxy-user] Contents of a SAM file
Jeremy Goecks
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2013/11/07
[galaxy-user] Contents of a SAM file
Benjamin Osei-agyeman
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2013/11/06
Re: [galaxy-user] Quality report
Benjamin Osei-agyeman
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2013/11/06
Re: [galaxy-user] Samtools Mpileup output
Carlos Borroto
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2013/11/06
Re: [galaxy-user] Quality report
James Taylor
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2013/11/06
Re: [galaxy-user] Quality report
Benjamin Osei-agyeman
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2013/11/06
[galaxy-user] Samtools Mpileup output
Fabrice Besnard
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2013/11/06
Re: [galaxy-user] Quality report
Ido Tamir
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2013/11/06
[galaxy-user] Quality report
Benjamin Osei-agyeman
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2013/11/05
Re: [galaxy-user] galaxy-user Digest, Vol 89, Issue 4
Jeremy Goecks
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2013/11/05
Re: [galaxy-user] galaxy-user Digest, Vol 89, Issue 4
Cory Dunn
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2013/11/05
Re: [galaxy-user] Cuffdiff version not apparent
graham etherington (TSL)
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2013/11/04
[galaxy-user] Nov 04, 2013 Galaxy Distribution
Jennifer Jackson
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2013/11/04
[galaxy-user] Cuffdiff version not apparent
Cory Dunn
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2013/11/03
[galaxy-user] Coding and non coding exons
Benjamin Osei-agyeman
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2013/11/01
Re: [galaxy-user] Galaxy's Tophat 2 -GTF option
Jennifer Jackson
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2013/11/01
Re: [galaxy-user] Grouping Histories into related Projects
Dannon Baker
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2013/11/01
[galaxy-user] Empty bowtie2 output
IIHG Galaxy Administrator
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2013/11/01
[galaxy-user] Grouping Histories into related Projects
Avery DeVries
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2013/10/31
[galaxy-user] November 2013 Galaxy Update Newsletter
Dave Clements
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2013/10/31
Re: [galaxy-user] mm7 chromosome name
Jennifer Jackson
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2013/10/31
Re: [galaxy-user] mm7 chromosome name
Kreiling, Jill
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2013/10/30
Re: [galaxy-user] Tool XML form building bug with <options from_data_table="..."> ?
Jennifer Jackson
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2013/10/30
Re: [galaxy-user] Server down
Jennifer Jackson
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2013/10/30
Re: [galaxy-user] mm7 chromosome name
Jennifer Jackson
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2013/10/30
Re: [galaxy-user] new cuffdiff with readgroup problem
Jennifer Jackson
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2013/10/30
Re: [galaxy-user] Trackster Error: needLargeMem: trying to allocate 0 bytes (limit: 100000000000)
Guest, Simon
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2013/10/30
Re: [galaxy-user] bacterial metatranscriptomes
Jennifer Jackson
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2013/10/30
[galaxy-user] SOLID RNA-Seq De Novo Transcriptome Assembly
Jennifer Jackson
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2013/10/30
Re: [galaxy-user] Trackster Error: needLargeMem: trying to allocate 0 bytes (limit: 100000000000)
Jeremy Goecks
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2013/10/30
Re: [galaxy-user] SFTP for local galaxy instance?
Jennifer Jackson
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2013/10/30
Re: [galaxy-user] Tool XML form building bug with <options from_data_table="..."> ?
dam...@learningpoint.ca
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2013/10/30
[galaxy-user] mm7 chromosome name
Kreiling, Jill
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2013/10/30
Re: [galaxy-user] Trackster Error: needLargeMem: trying to allocate 0 bytes (limit: 100000000000)
Björn Grüning
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2013/10/30
[galaxy-user] Trackster Error: needLargeMem: trying to allocate 0 bytes (limit: 100000000000)
Guest, Simon
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2013/10/30
[galaxy-user] Tool XML form building bug with <options from_data_table="..."> ?
dam...@learningpoint.ca
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2013/10/30
Re: [galaxy-user] 'Could not connect to server'
Dannon Baker
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2013/10/30
Re: [galaxy-user] 'Could not connect to server'
Dannon Baker
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2013/10/30
[galaxy-user] Server down
Suhana
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2013/10/30
[galaxy-user] 'Could not connect to server'
Leontovich, Alexey A., Ph.D.
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2013/10/29
[galaxy-user] bacterial metatranscriptomes
Soren Franzenburg
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2013/10/29
Re: [galaxy-user] [galaxy-dev] Bam File
Jeremy Goecks
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2013/10/28
Re: [galaxy-user] inconsistant error messages on disk quota?
Dannon Baker
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2013/10/28
Re: [galaxy-user] inconsistant error messages on disk quota?
Dannon Baker
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2013/10/26
Re: [galaxy-user] inconsistant error messages on disk quota?
Francis Ouellette
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2013/10/24
Re: [galaxy-user] posting supplementary information on galaxy server
Curtis Hendrickson (Campus)
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2013/10/24
[galaxy-user] SFTP for local galaxy instance?
Alicia Linford
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2013/10/22
Re: [galaxy-user] problems in transitioning from Tophat to Cuffdiff
Nate Coraor
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2013/10/22
Re: [galaxy-user] problems in transitioning from Tophat to Cuffdiff
Elwood Linney
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2013/10/22
Re: [galaxy-user] problems in transitioning from Tophat to Cuffdiff
Nate Coraor
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2013/10/22
Re: [galaxy-user] problems in transitioning from Tophat to Cuffdiff
Jennifer Jackson
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2013/10/22
Re: [galaxy-user] problems in transitioning from Tophat to Cuffdiff
Jeremy Goecks
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2013/10/22
[galaxy-user] problems in transitioning from Tophat to Cuffdiff
Elwood Linney
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2013/10/21
[galaxy-user] new cuffdiff with readgroup problem
Johanna Sandgren
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2013/10/18
Re: [galaxy-user] Issues on RNAseq since the changeover
Nate Coraor
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2013/10/18
[galaxy-user] Issues on RNAseq since the changeover
Elwood Linney
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2013/10/17
Re: [galaxy-user] Registration is Open for December Bioinformatics Bootcamps at UC Davis!
Dave Clements
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2013/10/16
Re: [galaxy-user] Need your helps about Galaxy
Lei Yan
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2013/10/16
Re: [galaxy-user] Need your helps about Galaxy
Larry Reiter
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2013/10/16
Re: [galaxy-user] Need your helps about Galaxy
Jennifer Jackson
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2013/10/16
Re: [galaxy-user] can I use GlobusOnline to transfer data to the usegalaxy server instead of ftp
Nate Coraor
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2013/10/16
Re: [galaxy-user] Cufflinks Help
Jennifer Jackson
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2013/10/16
[galaxy-user] can I use GlobusOnline to transfer data to the usegalaxy server instead of ftp
Hazard, E. Starr
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2013/10/16
Re: [galaxy-user] problem running Augustus
Björn Grüning
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2013/10/16
Re: [galaxy-user] Need your helps about Galaxy
Jennifer Jackson
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2013/10/16
Re: [galaxy-user] Metagenomic filtering
Scott Tighe
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2013/10/16
Re: [galaxy-user] problem running Augustus
Bjoern Gruening
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2013/10/16
[galaxy-user] Cufflinks Help
Thomas, Mervyn G. (Dr.)
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2013/10/16
[galaxy-user] problem running Augustus
Claudio Slamovits
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2013/10/15
[galaxy-user] Register Now for Galaxy Training: Analyzing NGS Data
Anushka Brownley
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2013/10/15
Re: [galaxy-user] Importing reference genome into Galaxy for Tophat2
Jennifer Jackson
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2013/10/14
Re: [galaxy-user] miRNA-seq help
Jennifer Jackson
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2013/10/14
Re: [galaxy-user] miRNA-seq help
Luciano Cosme
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2013/10/14
Re: [galaxy-user] miRNA-seq help
Gabriel Calvin
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2013/10/12
[galaxy-user] Importing reference genome into Galaxy for Tophat2
Stanislas Werfel
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2013/10/12
[galaxy-user] (no subject)
Stanislas w
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2013/10/11
Re: [galaxy-user] New cuffdiff- no result files
Jennifer Jackson
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2013/10/11
Re: [galaxy-user] New cuffdiff- no result files
Jennifer Jackson
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2013/10/11
Re: [galaxy-user] unable to import run or save-to-file published workflow after galaxy upgrade
Jeremy Goecks
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2013/10/11
Re: [galaxy-user] miRNA-seq help
Gabriel Calvin
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2013/10/11
Re: [galaxy-user] miRNA-seq help
Luciano Cosme
-
2013/10/11
Re: [galaxy-user] miRNA-seq help
Hoang, Thanh
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2013/10/11
[galaxy-user] miRNA-seq help
Gabriel Calvin
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2013/10/11
[galaxy-user] New cuffdiff- no result files
Johanna Sandgren
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2013/10/10
Re: [galaxy-user] Tophat for Illumina - built-in dog genome mislabelled
Jennifer Jackson
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2013/10/10
[galaxy-user] Tophat for Illumina - built-in dog genome mislabelled
Court, Michael
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2013/10/10
Re: [galaxy-user] Trouble viewing History from a particular laptop
Jennifer Jackson
-
2013/10/10
Re: [galaxy-user] Problems processing histories existing on galaxy before the changeover
Jennifer Jackson
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2013/10/10
[galaxy-user] Problems processing histories existing on galaxy before the changeover
Elwood Linney
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2013/10/09
Re: [galaxy-user] Online galaxy turning everything red on RNAseq steps
Nate Coraor
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2013/10/09
Re: [galaxy-user] Need your helps about Galaxy
Lei Yan