Thanks for the responses It appears these programs require some background
in Python or R. Is there a less code-intensive way to manipulate a sam or
bam into a format viewable in Excel? Does Galaxy provide a tool for this?

If it simply is a matter of learning code, so be it.


On Fri, Oct 11, 2013 at 3:20 PM, Gabriel Calvin <gac4...@gmail.com> wrote:

> The organism is fruit fly. The piRNA reference sequence was obtained from
> http://www.fruitfly.org/p_disrupt/TE.html as FASTA.FORMAT.v9.4.1.
>
> I will check out those programs.
>
> Gabriel
>
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