Hi Seung Hee,
You can request that this tool be added to the public Main server at
usegalaxy.org through Trello and the team will consider it. For right
now, the options are local or cloud. (as in my other reply)
Or, you can look around the the other public servers hosted by our
community - each is run by a distinct group with their own
contact/help/public-use criteria:
http://wiki.galaxyproject.org/PublicGalaxyServers
It may be simplest to see if a local will do the job, then upload the
results to the public server for downstream analysis. Just do the very
basics of a "production server" install and then add the tool to test it
out. This will take some line commands to set up, but shouldn't be too
much of an investment. The links are:
http://getgalaxy.org
http://usegalaxy.org/toolshed
http://wiki.galaxyproject.org/Tool%20Shed#Installing.2C_maintaining_and_uninstalling_tool_shed_repositories_within_a_Galaxy_instance
Local install help/discussion: galaxy-...@bx.psu.edu
Subscribe or search prior Q/A: http://wiki.galaxyproject.org/MailingLists
Take care,
Jen
Galaxy team
On 11/25/13 11:29 AM, Seung Hee Cho wrote:
Thank you for much for your great help!
I am trying to use this tool but I am wondering if I can use this
CutAdapt tools on the public server. I was working on my job on the
public server, so if not I need download it for use.
I truly appreciate your help!
Best,
*Seung Hee Cho*
Contreras Research Group, CPE 5.416
The University of Texas at Austin
Department of Chemical Engineering
200 E Dean Keeton St. Stop C0400
Austin, TX 78712-1589
On Mon, Nov 25, 2013 at 10:08 AM, Jennifer Jackson <j...@bx.psu.edu
<mailto:j...@bx.psu.edu>> wrote:
Thanks Peter for another option!
Jen
Galaxy team
On 11/23/13 6:19 AM, Peter Cock wrote:
On Fri, Nov 22, 2013 at 8:48 PM, Jennifer Jackson
<j...@bx.psu.edu <mailto:j...@bx.psu.edu>> wrote:
Hi Seung Hee,
I know we discussed this on the other list, but I didn't
point you to the
open development ticket to (potentially) extend the
functions of the "Cut"
tool. This is not being actively worked on right now, but
you can follow it
for updates if you want.
https://trello.com/c/CbFSHrU5
Others are still welcome to comment about what types of
solutions they might
have to offer. There is no specific tool to do this on
Main right now (or in
the Tool Shed, from my checks). http://usegalaxy.org/toolshed
This tool of mine might do what Seung Hee wanted,
but I have not tried it on very large Illumina datasets:
http://toolshed.g2.bx.psu.edu/view/peterjc/seq_primer_clip
Regards,
Peter
--
Jennifer Hillman-Jackson
http://galaxyproject.org
--
Jennifer Hillman-Jackson
http://galaxyproject.org
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