Hi Seung Hee,

You can request that this tool be added to the public Main server at usegalaxy.org through Trello and the team will consider it. For right now, the options are local or cloud. (as in my other reply)

Or, you can look around the the other public servers hosted by our community - each is run by a distinct group with their own contact/help/public-use criteria: http://wiki.galaxyproject.org/PublicGalaxyServers

It may be simplest to see if a local will do the job, then upload the results to the public server for downstream analysis. Just do the very basics of a "production server" install and then add the tool to test it out. This will take some line commands to set up, but shouldn't be too much of an investment. The links are:
Local install help/discussion: galaxy-...@bx.psu.edu
Subscribe or search prior Q/A: http://wiki.galaxyproject.org/MailingLists

Take care,

Galaxy team

On 11/25/13 11:29 AM, Seung Hee Cho wrote:
Thank you for much  for your great help!
I am trying to use this tool but I am wondering if I can use this CutAdapt tools on the public server. I was working on my job on the public server, so if not I need download it for use.
I truly appreciate your help!


*Seung Hee Cho*
Contreras Research Group, CPE 5.416
The University of Texas at Austin
Department of Chemical Engineering
200 E Dean Keeton St. Stop C0400
Austin, TX 78712-1589

On Mon, Nov 25, 2013 at 10:08 AM, Jennifer Jackson <j...@bx.psu.edu <mailto:j...@bx.psu.edu>> wrote:

    Thanks Peter for another option!

    Galaxy team

    On 11/23/13 6:19 AM, Peter Cock wrote:

        On Fri, Nov 22, 2013 at 8:48 PM, Jennifer Jackson
        <j...@bx.psu.edu <mailto:j...@bx.psu.edu>> wrote:

            Hi Seung Hee,

            I know we discussed this on the other list, but I didn't
            point you to the
            open development ticket to (potentially) extend the
            functions of the "Cut"
            tool. This is not being actively worked on right now, but
            you can follow it
            for updates if you want.

            Others are still welcome to comment about what types of
            solutions they might
            have to offer. There is no specific tool to do this on
            Main right now (or in
            the Tool Shed, from my checks). http://usegalaxy.org/toolshed

        This tool of mine might do what Seung Hee wanted,
        but I have not tried it on very large Illumina datasets:




-- Jennifer Hillman-Jackson

Jennifer Hillman-Jackson

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