Galaxy source includes the Galaxy interfaces but not the third party
executables for tools like fastqc or bwa. They can be automagically
installed if you install the tool from a tool shed but at a guess, you are
working on your desktop with the fastqc tool in a recent clone of galaxy?
Unfortunately, the tool can't run until you have the fastqc software
working in a particular way hinted at in the guide for the fastqc tool on
the page at http://wiki.galaxyproject.org/Admin/Tools/Tool%20Dependencies -
try that please?
There are things to do to make your instance more reliable and stable too -
On Mon, Dec 9, 2013 at 9:48 PM, Jorge Braun <braun_...@hotmail.com> wrote:
> Hi mates!!
> I have a problem with Galaxy... FastQC doesn't run because the file
> FastQC.py cann't find executable file FastQC.xml. Almost, that file is in
> the same directory called rgenetics, (seeing Linux terminal) .
> someone can help me?
> thanks and have a nice day :)
The Galaxy User list should be used for the discussion of
Galaxy analysis and other features on the public server
at usegalaxy.org. Please keep all replies on the list by
using "reply all" in your mail client. For discussion of
local Galaxy instances and the Galaxy source code, please
use the Galaxy Development list:
To manage your subscriptions to this and other Galaxy lists,
please use the interface at:
To search Galaxy mailing lists use the unified search at: