thanks for the information Ross but I'm lost with the guide for the fastqc 
tool. I don't understand how to resolve "missing tool dependecies"

Date: Mon, 9 Dec 2013 22:30:58 +1100
Subject: Re: [galaxy-user] Problem with executable file in FastQC

Hi, Jorge,Galaxy source includes the Galaxy interfaces but not the third party 
executables for tools like fastqc or bwa. They can be automagically installed 
if you install the tool from a tool shed but at a guess, you are working on 
your desktop with the fastqc tool in a recent clone of galaxy? Unfortunately, 
the tool can't run until you have the fastqc software working in a particular 
way hinted at in the guide for the fastqc tool on the page at - try that please?

There are things to do to make your instance more reliable and stable too - eg

On Mon, Dec 9, 2013 at 9:48 PM, Jorge Braun <> wrote:

Hi mates!!

I have a problem with Galaxy... FastQC doesn't run because the file 
cann't find executable file FastQC.xml. Almost, that file is in the same 
directory called rgenetics, (seeing Linux terminal) . 

someone can help me?

thanks and have a nice day :)

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